University of California, Riverside

Department of Chemistry



Computational Chemistry


computational
Theoretical and computational chemistry play a critical role in modern chemistry. Computational chemistry at UCR ranges from high-quality ab initio quantum chemistry calculations on molecules, surfaces, and in molecular crystals to molecular dynamics simulations of host-guest interactions and of large biomolecular simulations on systems containing tens of thousands of atoms. Our researchers use computational tools to interpet experiments, to understand chemical and biological mechanism at the atomic scale, and to make predictions that guide future experiments. Sometimes existing theoretical tools and software packages are sufficient for these studies. More often, however, we need to develop new conceptual frameworks, algorithms, and software to address current problems.

In addition to our research groups that focus entirely on theoretical chemistry, several of our experimental groups make extensive use of computational chemistry.

Theoretical & computational chemistry research groups:


Gregory Beran
Quantum chemistry in liquids and solids: The Beran group uses computational quantum chemistry to predict chemical behavior in the gas and condensed phases. Recent work has focused on predicting molecular crystal structures and properties, mechanisms in heterogenous catalysis, and the interpretation of various spectroscopic experiments. We develop the new theoretical algorithms that make high-quality and robust predictions feasible in these complex systems.

Chia-en Chang
Molecular dynamics in chemical and biological systems: The Chang group primarily uses classical molecular mechanics to investigate the chemistry of chemical and biological systems . We wish to understand how molecules can bind and how molecular flexibility influences ligand binding, and use the knowledge to design molecules and interpret experiments. Applications involve investigations of protein function, in silico drug design, and the manner in which host-guest molecules come together. We have developed new methods to understand the long time- and length-scales of the ligand binding kinetics.

De-en Jiang
Computational materials chemistry and nanoscience. Growth mechanism of nanostructures. Organic-inorganic interfaces in dictating the morphology of nanoshapes. High-accuracy potentials for structure prediction of nanocatalysts. Structure-property relationship of porous carbons in energy storage and gas separations. Electrolyte/electrode interfaces in batteries and supercapacitors.


Experimental groups that make extensive use of theory:


A large fraction of the research groups in our department use computational chemistry tools or collaborate with theoretical chemists. The following experimental groups, however, make particularly extensive use of theoretical modeling and have some group members who devote a significant fraction of their research effort toward theoretical modeling.

Ludwig Bartels
The Bartels group models the stability, adsorption and dynamic behavior of 2D materials (such as MoS2) and molecular adsorbates at metal surfaces (e.g. dithioanthracene on Cu) using density functional theory codes. We operate our own computational cluster with about 150 processors. Most commonly, we use VASP as DFT code, which allows modeling of solids and surfaces using periodic boundary conditions. Developing scripts to model dynamic behavior and gain chemical insight into surface reactions is at the center of our computational activity.

Ryan Julian
Mass spectrometry, spectroscopy, molecular dynamics, and ab initio calculations are used to examine the sequence, structure, and modification of biomolecules with an emphasis on proteins and peptides. Radical chemistry, supramolecular chemistry, ion-molecule reactions, photodissociation, and collisional activation are frequently employed in these experiments. The primary focus is to obtain a molecular level understanding of chemistry related to life.

Michael Marsella
The organic chemistry of protein-ligand interactions: The Marsella group is interested on the relationship between protein structure and ligand binding, and we use a combination of synthetic organic chemistry and computational chemistry to understand how we can exploit protein structure to design new drugs.

Thomas Morton
The organic chemistry of hydrogen bonds: The Morton group uses organic chemistry to investigate unusual hydrogen bonding patterns, such as in low-barrier hydrogen bonds and proton-bound DNA base-pair dimers. We synthesize these systems, characterize them with techniques such as infrared multiple photon dissociation, and use computational chemistry to help interpret these resulting spectra and understand the fundamental interactions involved.

Leonard Mueller
Solid-state NMR in enzymes: The Mueller group is developing NMR crystallography - the synergistic combination of solid-state NMR and X-ray crystallography - to investigate enzyme catalytic mechanism at a new level of atomic detail. Tying these techniques together is computational chemistry (quantum and mixed quantum/classical calculations), which allows specific models of the chemical structure to be built upon the coarse X-ray framework and then tested by a comparison of predicted (ab initio) and assigned chemical shifts. The result is a unique and chemically-rich molecular view into functioning enzyme catalysis.

More Information 

General Campus Information

University of California, Riverside
900 University Ave.
Riverside, CA 92521
Tel: (951) 827-1012

Department Information

Department of Chemistry
Chemical Sciences
501 Big Springs Road

Tel: (951) 827-3789 (Chair's Assistant)
Fax: (951) 827-2435 (confidential)
E-mail: eric.chronister@ucr.edu

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